5-(3-Aminoallyl)-2'-deoxyuridine-5'-triphosphate, labeled with AF647, Triethylammonium salt
For research use only!
Shipping: shipped on blue ice
Storage Conditions: store at -20 °C
Short term exposure (up to 1 week cumulative) to ambient temperature possible.
Shelf Life: 12 months after date of delivery
Molecular Formula: C61H88N7O29P3S2 (free acid)
Molecular Weight: 1604.56 g/mol (free acid)
Exact Mass: 1603.37 g/mol (free acid)
Purity: ≥ 95 % (HPLC)
Form: sterile blue solution in 10 mM Tris-HCl
Concentration: 1.0 mM - 1.1 mM
pH: 7.5 ±0.5
Spectroscopic Properties: λexc 648 nm, λem 671 nm, ε 270.0 L mmol-1 cm-1 (Tris-HCl pH 7.5)
Incorporation into DNA/cDNA by
- PCR with Taq polymerase in-house data
- Nick Translation with DNAse I/ DNA Polymerase I in-house data
Aminoallyl-dUTP-XX-AF647 is recommended for direct enzymatic labeling of DNA/cDNA e.g. by PCR and Nick Translation. It is incorporated as substitute for its natural counterpart dTTP. The resulting Dye-labeled DNA/cDNA probes are ideally suited for fluorescence hybridization applications such as FISH or microarray-based gene expression profiling.Optimal substrate properties and thus labeling efficiency is ensured by an optimized linker attached to the C5 position of uridine. AF647 (structural analog to Alexa Fluor 647®) is a hydrophilic dye with excellent photostability compared to fluorescein.
Recommended Aminoallyl-dUTP-XX-AF647/dTTP ratio for PCR and Nick Translation: 30-50% Aminoallyl-dUTP-XX-AF647/ 70-50% dTTP
Please note: Protect the Dye-labeled dUTP from exposure to light and carry out experimental procedures in low light conditions. The optimal final concentration of the Dye-labeled dUTP may very depending on the application and assay conditions. For optimal product yields and high incorporation rates an individual optimization of the Dye-labeled-dUTP/dTTP ratio is recommended.