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Fluorescent Nucleotides for RNA Labeling


Nucleotide Selector for RNA Labeling
Select a suitable nucleotide substrate for enzymatic RNA Labeling.

Table 1: Enzymatic incorporation of fluorescent Nucleotides.


cRNA Labeling
by in vitro Transcription with...
3'-RNA Labeling by...
Emission
color
Nucleotide Cat. No. T7 RNA Polymerase T3 RNA Polymerase SP6 RNA Polymerase yPAP TdT T4 RNA Ligase
UTP
blue UTP-PEG5-AZDye405 NU-821-PEG5-AZ405 1 n/a n/a n/a n/a -
green Fluorescein-12-UTP NU-821-FAMX 1 n/a n/a n/a n/a -
UTP-PEG5-AZDye488 NU-821-PEG5-AZ488 1 n/a n/a n/a n/a -
UTP-ATTO-488 NU-821-488 1 n/a n/a n/a n/a -
yellow-
green
UTP-ATTO-532 NU-821-532 1 n/a n/a n/a n/a -
yellow UTP-Cy3 NU-821-Cy3 1 n/a n/a n/a n/a -
UTP-X-Cy3 NU-821-X-CY3 1 n/a n/a n/a n/a -
UTP-PEG5-AZDye555 NU-821-PEG5-AZ555 1 n/a n/a n/a n/a -
orange UTP-PEG5-AZDye594 NU-821-PEG5-AZ594 1 n/a n/a n/a n/a -
red UTP-Cy5 NU-821-Cy5 1 n/a n/a n/a n/a -
UTP-X-Cy5 NU-821-X-CY5 1 n/a n/a n/a n/a -
UTP-PEG5-AZDye647 NU-821-PEG5-AZ647 1 n/a n/a n/a n/a -
UTP-PEG5-STAR RED NU-821-PEG5-STRED 1 n/a n/a n/a n/a -
near-IR UTP-680 NU-821-680 2 n/a n/a n/a n/a -
UTP-PEG5-IR680LT NU-821-PEG5-IR680LT 1 n/a n/a n/a n/a -
UTP-PEG5-IR750 NU-821-PEG5-IR750 1 n/a n/a n/a n/a -
CTP
green CTP-PEG5-AZDye488 NU-831-PEG5-AZ488 1 n/a n/a n/a n/a -
yellow CTP-Cy3 NU-831-Cy3 1 n/a n/a n/a n/a -
CTP-PEG5-AZDye555 NU-831-PEG5-AZ555 1 n/a n/a n/a n/a -
orange CTP-PEG5-AZDye594 NU-831-PEG5-AZ594 1 n/a n/a n/a n/a -
red CTP-Cy5 NU-831-Cy5 1 n/a n/a n/a n/a -
CTP-PEG5-AZDye647 NU-831-PEG5-AZ647 1 n/a n/a n/a n/a -
ATP
green 7-Propargylamino-7-deaza-ATP-PEG5-Fluorescein NU-957-PEG5-FAMX 1 n/a n/a n/a n/a -
7-Propargylamino-7-deaza-ATP-PEG5-AZDye488 NU-957-PEG5-AZ488 1 n/a n/a n/a n/a -
yellow 7-Propargylamino-7-deaza-ATP-PEG5-Cy3 NU-957-PEG5-Cy3 1 n/a n/a n/a n/a -
7-Propargylamino-7-deaza-ATP-PEG5-AZDye555 NU-957-PEG5-AZ555 1 n/a n/a n/a n/a -
orange 7-Propargylamino-7-deaza-ATP-PEG5-AZDye594 NU-957-PEG5-AZ594 1 n/a n/a n/a n/a -
red 7-Propargylamino-7-deaza-ATP-PEG5-Cy5 NU-957-PEG5-Cy5 1 n/a n/a n/a n/a -
7-Propargylamino-7-deaza-ATP-PEG5-AZDye647 NU-957-PEG5-AZ647 1 n/a n/a n/a n/a -
Cytidine-5’/3’-phosphate
green pCp-AZDye488 NU-1706-AZ488 - - - - - 1
pCp-488 NU-1706-488 - - - - - 1
yellow pCp-Cy3 NU-1706-Cy3 - - - - - 1
pCp-AZDye555 NU-1706-AZ555 - - - - - 1
orange pCp-AZDye594 NU-1706-AZ594 - - - - - 1
red pCp-Cy5 NU-1706-Cy5 - - - - - 1
pCp-643 NU-1706-643 - - - - - 1
pCp-AZDye647 NU-1706-AZ647 - - - - - 1
near-IR pCp-IR680LT NU-1706-IR680LT - - - - - 1
pCp-IR750 NU-1706-IR750 - - - - - 1
yPAP: Yeast Poly A Polymerase
TdT: Terminal deoxynucleotidyl Transferase.
1: in-house tested
2: external reference (see datasheet)
n/a: no data available
- : not applicable
 

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