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Efficient RNA Labeling with abberior® STAR dyes

Abberior® STAR 580 and STAR RED dyes are hydrophilic fluorescent dyes with remarkable photostability that give optimal performance of dye-conjugates in STED and confocal microscopy.

Jena Bioscience now offers STAR RED-labeled UTP as well as the corresponding HighYield T7 RNA Labeling Kit for in vitro transcription-based direct labeling of RNA probes.

Linker-optimized abberior® STAR dye-labeled UTPs in combination with an optimized enzyme mix allow efficient preparation of abberior® STAR dye-labeled RNA probes (> 100 nt up to several thousand nt) (Fig. 1, Tab. 1).

Table 1: Single nucleotide and HighYield T7 RNA Labeling kit for efficient abberior® STAR RED labeling.
Product Dye Substitute for Excmax / Emmax
[nm]
Recommended range of substitution
UTP-PEG5-STAR RED abberior® STAR RED AZDye 647 / Alexa Fluor®647 / Cy5 638 / 655 20 - 40 %
HighYield T7 STAR RED RNA Labeling Kit

Enzymatic properties of abberior® STAR-labeled UTPs are comparable to AZDye-labeled counterparts:

Figure 1: Enzymatic properties of Abberior® STAR-labeled UTPs are comparable to Alexa Fluor® dye-labeled counterparts.

Figure 1: In vitro transcription-based direct labeling of RNA probes with abberior® STAR dye-labeled UTP. Comparison of UTP-PEG5-STAR RED & UTP-PEG5-AZDye 647.

1.4 kbp RNA was generated using HighYield T7 AZDye 647 RNA Labeling Kit components in combination with an abberior® STAR or AZDye-labeled UTP. Reaction conditions: 1 µg DNA template, 30 min at 37 °C. Crude in vitro reaction mix was subsequently analyzed be agarose gel electrophoresis (Visualization of total RNA with RNA intercalator EtBr / 0 – 100 %: Increasing percentage of UTP substitution by labeled UTP).

Questions or inquiries?

Dr. Barbara Zschoernig

Contact us if you are interested in different abberior® dye-labeled nucleotides!